halophFGD

Basic Information

Locus ID: Thhalv10009588m.g.v1.0

Species & Taxonomic ID: Eutrema salsugineum & 72664

Genome Assembly: GCF_000478725.1

Description: F-box protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
scaffold_5	3788147	3789415	-	Thhalv10009588m.g.v1.0

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.58	48,638.40 Da	39.62	75.50	-0.36

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF08268	F-box associated domain	221	344	7.5E-35	IPR013187
SUPERFAMILY	SSF81383	F-box domain	19	92	2.22E-10	IPR036047
TIGRFAM	TIGR01640	F_box_assoc_1: F-box protein interaction domain	143	352	4.0E-50	IPR017451
MobiDBLite	mobidb-lite	consensus disorder prediction	400	422	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G33020.1	F-box and associated interaction domains-containing protein.
RefSeq	XP_006415394.1	putative F-box protein At1g30925 [Eutrema salsugineum]
Swiss-Prot	Q9MAP1	Putative F-box protein At1g33020 OS=Arabidopsis thaliana OX=3702 GN=At1g33020 PE=4 SV=2
TrEMBL	V4K7X4	FBA_3 domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10009588mg PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Apiaceae	Apium graveolens	1	Ag5G01648
Asparagaceae	Asparagus officinalis	4	AsparagusV1_07.1660.V1.1, AsparagusV1_07.1661.V1.1 ... AsparagusV1_07.1662.V1.1, AsparagusV1_08.1417.V1.1
Brassicaceae	Arabidopsis thaliana	77	AT1G19160.1, AT1G26510.1, AT1G26515.1, AT1G30920.1 ... AT1G30925.1, AT1G30930.1, AT1G31000.1, AT1G31080.1, AT1G31090.1, AT1G31163.1, AT1G32420.1, AT1G33010.1, AT1G33020.1, AT1G43005.1, AT1G46840.1, AT1G46912.1, AT1G46984.1, AT1G47300.1, AT1G47340.1, AT1G47350.1, AT1G47730.1, AT1G47765.1, AT1G47790.1, AT1G48060.1, AT1G50870.1, AT1G53360.1, AT1G53370.1, AT1G53550.1, AT1G53790.2, AT1G53815.1, AT1G55070.1, AT1G59675.1, AT1G60370.1, AT1G61060.1, AT1G67130.1, AT2G02660.1, AT2G02890.1, AT2G13630.1, AT2G15640.1, AT2G16220.1, AT2G16450.1, AT2G19630.1, AT2G21930.1, AT2G23160.1, AT2G31470.1, AT2G32470.1, AT2G33705.1, AT3G04660.1, AT3G10240.1, AT3G10790.1, AT3G10990.1, AT3G23960.1, AT3G47020.1, AT3G47030.1, AT3G49440.1, AT3G49450.1, AT3G56890.1, AT3G57580.1, AT3G57590.1, AT3G61340.1, AT4G09190.1, AT4G11590.1, AT4G13060.1, AT4G21240.1, AT4G29970.1, AT4G38870.1, AT5G15660.1, AT5G15670.1, AT5G18160.1, AT5G22791.2, AT5G38810.1, AT5G42430.1, AT5G43550.1, AT5G44220.1, AT5G52610.1, AT5G52620.1, AT5G65850.1
Brassicaceae	Eutrema salsugineum	140	Thhalv10000190m.g.v1.0, Thhalv10000202m.g.v1.0 ... Thhalv10000468m.g.v1.0, Thhalv10000505m.g.v1.0, Thhalv10000643m.g.v1.0, Thhalv10002880m.g.v1.0, Thhalv10002973m.g.v1.0, Thhalv10002976m.g.v1.0, Thhalv10003077m.g.v1.0, Thhalv10003313m.g.v1.0, Thhalv10003347m.g.v1.0, Thhalv10003356m.g.v1.0, Thhalv10003391m.g.v1.0, Thhalv10003413m.g.v1.0, Thhalv10005289m.g.v1.0, Thhalv10006428m.g.v1.0, Thhalv10006464m.g.v1.0, Thhalv10007859m.g.v1.0, Thhalv10009303m.g.v1.0, Thhalv10009304m.g.v1.0, Thhalv10009314m.g.v1.0, Thhalv10009316m.g.v1.0, Thhalv10009318m.g.v1.0, Thhalv10009326m.g.v1.0, Thhalv10009341m.g.v1.0, Thhalv10009344m.g.v1.0, Thhalv10009370m.g.v1.0, Thhalv10009377m.g.v1.0, Thhalv10009427m.g.v1.0, Thhalv10009437m.g.v1.0, Thhalv10009439m.g.v1.0, Thhalv10009451m.g.v1.0, Thhalv10009454m.g.v1.0, Thhalv10009507m.g.v1.0, Thhalv10009523m.g.v1.0, Thhalv10009543m.g.v1.0, Thhalv10009572m.g.v1.0, Thhalv10009588m.g.v1.0, Thhalv10009603m.g.v1.0, Thhalv10009610m.g.v1.0, Thhalv10009617m.g.v1.0, Thhalv10009628m.g.v1.0, Thhalv10009630m.g.v1.0, Thhalv10009643m.g.v1.0, Thhalv10009644m.g.v1.0, Thhalv10009646m.g.v1.0, Thhalv10009665m.g.v1.0, Thhalv10009733m.g.v1.0, Thhalv10009740m.g.v1.0, Thhalv10009752m.g.v1.0, Thhalv10009762m.g.v1.0, Thhalv10009794m.g.v1.0, Thhalv10009823m.g.v1.0, Thhalv10009829m.g.v1.0, Thhalv10009854m.g.v1.0, Thhalv10009883m.g.v1.0, Thhalv10009932m.g.v1.0, Thhalv10009934m.g.v1.0, Thhalv10010425m.g.v1.0, Thhalv10010942m.g.v1.0, Thhalv10011009m.g.v1.0, Thhalv10011044m.g.v1.0, Thhalv10011080m.g.v1.0, Thhalv10011121m.g.v1.0, Thhalv10011954m.g.v1.0, Thhalv10011960m.g.v1.0, Thhalv10011962m.g.v1.0, Thhalv10011966m.g.v1.0, Thhalv10011975m.g.v1.0, Thhalv10011993m.g.v1.0, Thhalv10011995m.g.v1.0, Thhalv10012047m.g.v1.0, Thhalv10012059m.g.v1.0, Thhalv10012065m.g.v1.0, Thhalv10012070m.g.v1.0, Thhalv10012082m.g.v1.0, Thhalv10012093m.g.v1.0, Thhalv10012114m.g.v1.0, Thhalv10012144m.g.v1.0, Thhalv10012153m.g.v1.0, Thhalv10012176m.g.v1.0, Thhalv10012180m.g.v1.0, Thhalv10012205m.g.v1.0, Thhalv10012217m.g.v1.0, Thhalv10012242m.g.v1.0, Thhalv10012245m.g.v1.0, Thhalv10012258m.g.v1.0, Thhalv10012264m.g.v1.0, Thhalv10012275m.g.v1.0, Thhalv10012279m.g.v1.0, Thhalv10012287m.g.v1.0, Thhalv10012302m.g.v1.0, Thhalv10012324m.g.v1.0, Thhalv10012341m.g.v1.0, Thhalv10012345m.g.v1.0, Thhalv10012346m.g.v1.0, Thhalv10012359m.g.v1.0, Thhalv10012370m.g.v1.0, Thhalv10012378m.g.v1.0, Thhalv10012379m.g.v1.0, Thhalv10015249m.g.v1.0, Thhalv10015343m.g.v1.0, Thhalv10015360m.g.v1.0, Thhalv10015410m.g.v1.0, Thhalv10015435m.g.v1.0, Thhalv10015621m.g.v1.0, Thhalv10015706m.g.v1.0, Thhalv10015829m.g.v1.0, Thhalv10015870m.g.v1.0, Thhalv10015881m.g.v1.0, Thhalv10015900m.g.v1.0, Thhalv10015925m.g.v1.0, Thhalv10017547m.g.v1.0, Thhalv10017821m.g.v1.0, Thhalv10017831m.g.v1.0, Thhalv10019461m.g.v1.0, Thhalv10019467m.g.v1.0, Thhalv10019504m.g.v1.0, Thhalv10019539m.g.v1.0, Thhalv10019545m.g.v1.0, Thhalv10019719m.g.v1.0, Thhalv10020859m.g.v1.0, Thhalv10021999m.g.v1.0, Thhalv10022001m.g.v1.0, Thhalv10022123m.g.v1.0, Thhalv10022199m.g.v1.0, Thhalv10022230m.g.v1.0, Thhalv10023641m.g.v1.0, Thhalv10023891m.g.v1.0, Thhalv10025406m.g.v1.0, Thhalv10026790m.g.v1.0, Thhalv10026850m.g.v1.0, Thhalv10027150m.g.v1.0, Thhalv10027194m.g.v1.0, Thhalv10027439m.g.v1.0, Thhalv10027600m.g.v1.0, Thhalv10028042m.g.v1.0, Thhalv10028106m.g.v1.0, Thhalv10029328m.g.v1.0, Thhalv10029487m.g.v1.0
Brassicaceae	Schrenkiella parvula	23	Sp1g02140.v2.2, Sp1g24400.v2.2, Sp1g27310.v2.2 ... Sp1g27840.v2.2, Sp1g33140.v2.2, Sp1g34250.v2.2, Sp1g34800.v2.2, Sp1g37610.v2.2, Sp1g37770.v2.2, Sp1g40720.v2.2, Sp3g00660.v2.2, Sp3g03500.v2.2, Sp3g03510.v2.2, Sp3g17210.v2.2, Sp4g14420.v2.2, Sp5g04230.v2.2, Sp5g04240.v2.2, Sp5g12630.v2.2, Sp6g06960.v2.2, Sp6g28450.v2.2, Sp7g04870.v2.2, Sp7g24400.v2.2, SpUn0074_0030.v2.2
Brassicaceae	Brassica nigra	133	BniB01g001870.2N, BniB01g010610.2N, BniB01g010810.2N ... BniB01g010850.2N, BniB01g011630.2N, BniB01g011970.2N, BniB01g011990.2N, BniB01g012020.2N, BniB01g012030.2N, BniB01g012090.2N, BniB01g012190.2N, BniB01g012500.2N, BniB01g012530.2N, BniB01g012540.2N, BniB01g012580.2N, BniB01g012950.2N, BniB01g012960.2N, BniB01g012970.2N, BniB01g021660.2N, BniB01g022210.2N, BniB01g022230.2N, BniB01g039610.2N, BniB01g039740.2N, BniB01g044180.2N, BniB01g050970.2N, BniB01g057440.2N, BniB01g059090.2N, BniB01g059700.2N, BniB02g004780.2N, BniB02g010580.2N, BniB02g014000.2N, BniB02g040900.2N, BniB02g047140.2N, BniB02g047180.2N, BniB02g047200.2N, BniB02g048060.2N, BniB02g054960.2N, BniB03g007790.2N, BniB03g010060.2N, BniB03g016980.2N, BniB03g020820.2N, BniB03g021720.2N, BniB03g021760.2N, BniB03g021770.2N, BniB03g021840.2N, BniB03g021860.2N, BniB03g021870.2N, BniB03g021880.2N, BniB03g034710.2N, BniB03g035320.2N, BniB03g035330.2N, BniB03g044450.2N, BniB03g045100.2N, BniB03g045220.2N, BniB03g045230.2N, BniB03g054750.2N, BniB03g058220.2N, BniB04g020390.2N, BniB04g024890.2N, BniB04g041620.2N, BniB04g041640.2N, BniB04g042790.2N, BniB04g042820.2N, BniB04g048150.2N, BniB04g048180.2N, BniB04g048190.2N, BniB04g048230.2N, BniB04g048270.2N, BniB04g048310.2N, BniB04g048330.2N, BniB04g058760.2N, BniB04g059420.2N, BniB04g059450.2N, BniB04g059480.2N, BniB04g059530.2N, BniB04g063630.2N, BniB04g063660.2N, BniB05g009930.2N, BniB05g014560.2N, BniB05g014640.2N, BniB05g014690.2N, BniB05g015540.2N, BniB05g021300.2N, BniB05g021310.2N, BniB05g023670.2N, BniB05g029010.2N, BniB05g041450.2N, BniB05g041520.2N, BniB05g060990.2N, BniB05g061010.2N, BniB05g063190.2N, BniB05g063210.2N, BniB06g005790.2N, BniB06g010060.2N, BniB06g011060.2N, BniB06g012790.2N, BniB06g020540.2N, BniB06g020770.2N, BniB06g020900.2N, BniB06g021130.2N, BniB06g021210.2N, BniB06g021220.2N, BniB06g021460.2N, BniB06g023660.2N, BniB06g026800.2N, BniB06g027740.2N, BniB06g030160.2N, BniB06g047600.2N, BniB06g048710.2N, BniB06g057550.2N, BniB06g064680.2N, BniB07g009330.2N, BniB07g045510.2N, BniB07g058650.2N, BniB07g059370.2N, BniB08g010950.2N, BniB08g011400.2N, BniB08g020060.2N, BniB08g020740.2N, BniB08g028950.2N, BniB08g028960.2N, BniB08g028980.2N, BniB08g028990.2N, BniB08g035250.2N, BniB08g035280.2N, BniB08g035330.2N, BniB08g043500.2N, BniB08g063050.2N, BniB08g063070.2N, BniB08g063540.2N, BniB08g073170.2N, BniS25022g010.2N, BniS25022g030.2N
Portulacaceae	Portulaca oleracea	2	evm.TU.LG02.1335, evm.TU.LG03.15
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_15_RagTag.21, evm.TU.Scaffold_17_RagTag.985
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-23706, nbisL1-mrna-26307, nbisL1-mrna-30200
Rhizophoraceae	Kandelia candel	1	add.evm.TU.utg000001l.7
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-11705
Salicaceae	Populus euphratica	2	populus_peu06950, populus_peu07295
Solanaceae	Lycium barbarum	22	gene-LOC132600137, gene-LOC132605467, gene-LOC132607283 ... gene-LOC132608325, gene-LOC132611684, gene-LOC132612846, gene-LOC132617929, gene-LOC132619462, gene-LOC132619467, gene-LOC132620162, gene-LOC132620204, gene-LOC132623533, gene-LOC132624756, gene-LOC132628532, gene-LOC132628536, gene-LOC132629295, gene-LOC132629297, gene-LOC132637129, gene-LOC132639897, gene-LOC132639898, gene-LOC132639900, gene-LOC132641865
Solanaceae	Solanum chilense	4	SOLCI002533700, SOLCI002640100, SOLCI003759200 ... SOLCI005659900
Solanaceae	Solanum pennellii	10	gene-LOC107016884, gene-LOC107020295, gene-LOC107030852 ... gene-LOC114075240, gene-LOC114075356, gene-LOC114075587, gene-LOC114075617, gene-LOC114075656, gene-LOC114076467, gene-LOC114076739