Basic Information
Locus ID:
Thhalv10009565m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
endonuclease activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_5 | 9692597 | 9694134 | - | Thhalv10009565m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.63 | 50,174.07 Da | 38.34 | 105.24 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 12 | 49 | 1.2E-8 | IPR001810 |
| Pfam | PF07723 | Leucine Rich Repeat | 158 | 185 | 8.7E-6 | IPR013101 |
| Pfam | PF08387 | FBD | 351 | 392 | 1.2E-10 | IPR006566 |
| SUPERFAMILY | SSF81383 | F-box domain | 9 | 76 | 1.7E-12 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 80 | 282 | 1.06E-11 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 53 | 412 | 1.0E-11 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 11 | 52 | 4.4E-8 | - |
| SMART | SM00579 | 9598neu4hmm | 354 | 420 | 2.4E-11 | IPR006566 |
| SMART | SM00256 | fbox_2 | 15 | 54 | 4.4E-8 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 9 | 59 | 11.987943 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G16940.1 | F-box/RNI-like/FBD-like domains-containing protein. | 0 |
| RefSeq | XP_024009108.1 | putative F-box/FBD/LRR-repeat protein At1g16940 [Eutrema salsugineum] | 0 |
| Q9FZ53 | Putative F-box/FBD/LRR-repeat protein At1g16940 OS=Arabidopsis thaliana OX=3702 GN=At1g16940 PE=4 SV=1 | 0 | |
| TrEMBL | V4KBN3 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10009565mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G16940.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10009565m.g.v1.0 |