Basic Information
Locus ID:
Thhalv10009548m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
F-box associated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_5 | 3191827 | 3192801 | - | Thhalv10009548m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.54 | 37,623.62 Da | 43.24 | 82.99 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07734 | F-box associated | 189 | 321 | 6.2E-31 | IPR006527 |
| Pfam | PF00646 | F-box domain | 10 | 41 | 1.7E-8 | IPR001810 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 94 | 315 | 6.41E-5 | IPR011043 |
| SUPERFAMILY | SSF81383 | F-box domain | 8 | 118 | 1.24E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 4 | 43 | 7.0E-7 | - |
| SMART | SM00256 | fbox_2 | 7 | 47 | 6.2E-9 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 92 | 320 | 8.4E-48 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 54 | 8.861604 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G47390.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_006415272.2 | LOW QUALITY PROTEIN: putative F-box protein At1g47390 [Eutrema salsugineum] | 0 |
| Q9FX09 | Putative F-box protein At1g47390 OS=Arabidopsis thaliana OX=3702 GN=At1g47390 PE=4 SV=1 | 0 | |
| TrEMBL | V4K7N5 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10009548mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 22 | AT1G12170.1, AT1G12190.1, AT1G32430.1, AT1G47390.1 ... |
| Brassicaceae | Eutrema salsugineum | 17 | Thhalv10002898m.g.v1.0, Thhalv10006465m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g27690.v2.2, Sp5g16370.v2.2 |
| Brassicaceae | Brassica nigra | 23 | BniB01g008560.2N, BniB01g010040.2N, BniB01g047060.2N ... |