Basic Information
Locus ID:
Thhalv10009448m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
F-box kelch-repeat protein At3g06240-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_5 | 10380283 | 10381494 | + | Thhalv10009448m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.93 | 42,903.22 Da | 46.00 | 83.19 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 9 | 52 | 5.9E-6 | IPR001810 |
| Pfam | PF07734 | F-box associated | 206 | 305 | 2.7E-6 | IPR006527 |
| SUPERFAMILY | SSF81383 | F-box domain | 8 | 52 | 9.81E-7 | IPR036047 |
| SUPERFAMILY | SSF117281 | Kelch motif | 122 | 334 | 8.11E-11 | IPR015915 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 80 | 2.4E-5 | - |
| Gene3D | G3DSA:2.120.10.80 | - | 109 | 350 | 3.3E-11 | IPR015915 |
| SMART | SM00256 | fbox_2 | 10 | 50 | 3.1E-6 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 110 | 304 | 1.2E-22 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 4 | 50 | 9.25902 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12855.1 | F-box family protein. | 0 |
| RefSeq | XP_024007795.1 | LOW QUALITY PROTEIN: putative F-box/kelch-repeat protein At1g12870 [Eutrema salsugineum] | 0 |
| Q9LPW4 | Putative F-box protein At1g12855 OS=Arabidopsis thaliana OX=3702 GN=At1g12855 PE=4 SV=1 | 0 | |
| TrEMBL | V4KVF8 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10009448mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10009448m.g.v1.0 |
| Brassicaceae | Brassica nigra | 2 | BniB02g026720.2N, BniB05g064510.2N |