Basic Information
Locus ID:
Thhalv10008984m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
calcium-binding protein CML15
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_5 | 9132877 | 9133367 | - | Thhalv10008984m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.23 | 17,171.30 Da | 26.77 | 99.49 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 82 | 144 | 3.56041E-18 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 6 | 67 | 5.2E-11 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 81 | 143 | 7.6E-14 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 2 | 144 | 1.01E-40 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 72 | 150 | 7.4E-24 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 1 | 71 | 3.3E-18 | - |
| SMART | SM00054 | efh_1 | 118 | 146 | 4.7E-7 | IPR002048 |
| SMART | SM00054 | efh_1 | 7 | 35 | 0.0031 | IPR002048 |
| SMART | SM00054 | efh_1 | 82 | 110 | 8.6E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 43 | 71 | 1.9 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 114 | 149 | 13.258112 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 78 | 113 | 14.876045 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 39 | 74 | 9.771187 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 3 | 38 | 14.42972 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 52 | 64 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 16 | 28 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 127 | 139 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 91 | 103 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18530.1 | EF hand calcium-binding protein family. | 0 |
| RefSeq | XP_006416597.2 | tetraspanin-11 [Eutrema salsugineum] | 0 |
| Q9FZ75 | Probable calcium-binding protein CML15 OS=Arabidopsis thaliana OX=3702 GN=CML15 PE=2 SV=1 | 0 | |
| TrEMBL | V4KUD7 | EF-hand domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10008984mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology