Basic Information
Locus ID:
Thhalv10008909m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_5 | 13985720 | 13988888 | + | Thhalv10008909m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.37 | 21,005.09 Da | 82.52 | 78.97 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 116 | 160 | 7.7E-8 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 107 | 164 | 2.42E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 93 | 172 | 1.3E-14 | IPR013083 |
| SMART | SM00184 | ring_2 | 117 | 159 | 1.7E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 117 | 160 | 11.412309 | IPR001841 |
| Coils | Coil | Coil | 92 | 117 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_038707295.1 | RING-H2 finger protein ATL16-like [Tripterygium wilfordii] | 0 |
| TrEMBL | V4KYC6 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10008909mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for Thhalv10008909m.g.v1.0.