Basic Information
Locus ID:
Thhalv10008718m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
JAB/MPN domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_5 | 12080489 | 12082327 | - | Thhalv10008718m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.92 | 24,747.42 Da | 50.56 | 76.31 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 45 | 222 | 8.03873E-102 | IPR044098 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 46 | 151 | 4.5E-16 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 48 | 179 | 2.09E-22 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 33 | 222 | 1.1E-66 | - |
| SMART | SM00232 | pad1_6 | 47 | 175 | 5.4E-14 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 48 | 176 | 28.711048 | IPR037518 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10600.1 | associated molecule with the SH3 domain of STAM 2. | 0 |
| RefSeq | XP_006417447.1 | AMSH-like ubiquitin thioesterase 2 isoform X1 [Eutrema salsugineum] | 0 |
| Q6NKP9 | AMSH-like ubiquitin thioesterase 2 OS=Arabidopsis thaliana OX=3702 GN=AMSH2 PE=2 SV=1 | 0 | |
| TrEMBL | V4KDJ4 | MPN domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10008718mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology