Basic Information
Locus ID:
Thhalv10008679m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_5 | 14486915 | 14489432 | - | Thhalv10008679m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.24 | 25,335.79 Da | 38.16 | 68.08 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 12 | 220 | 4.3E-74 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 108 | 210 | 5.0E-20 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 104 | 223 | 1.2E-41 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 110 | 211 | 22.417866 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 62 | 83 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04250.1 | AUX/IAA transcriptional regulator family protein. Transcription regulator acting as repressor of auxin-inducible gene expression. Auxin-inducible AUX/IAA gene. Short-lived nuclear protein with four conserved domains. Domain III has homology to beta alpha alpha dimerization and DNA binding domains. Involved in auxin signaling. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF, CSN and 26S proteasome components. | 0 |
| RefSeq | XP_006418150.1 | auxin-responsive protein IAA17 isoform X1 [Eutrema salsugineum] | 0 |
| P93830 | Auxin-responsive protein IAA17 OS=Arabidopsis thaliana OX=3702 GN=IAA17 PE=1 SV=2 | 0 | |
| TrEMBL | V4L9U2 | Auxin-responsive protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10008679mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology