Basic Information
Locus ID:
Thhalv10008603m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
RNA recognition motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_5 | 8073379 | 8075176 | + | Thhalv10008603m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.86 | 27,113.91 Da | 57.58 | 54.94 | -0.88 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12420 | RRM_RBPMS_like | 147 | 221 | 1.43888E-35 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 149 | 216 | 3.5E-9 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 127 | 243 | 6.52E-14 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 143 | 234 | 1.6E-18 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 148 | 224 | 0.0032 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 147 | 233 | 11.980452 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 52 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 215 | 245 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 52 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21320.2 | nucleotide binding;nucleic acid binding. | 0 |
| RefSeq | XP_006416317.1 | nuclear speckle RNA-binding protein B [Eutrema salsugineum] | 0 |
| F4HWF9 | Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE=2 SV=1 | 0 | |
| TrEMBL | V4KAG6 | RRM domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10008603mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology