Basic Information
Locus ID:
Thhalv10008589m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_5 | 10542699 | 10544794 | + | Thhalv10008589m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.62 | 28,792.26 Da | 73.90 | 75.06 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 102 | 240 | 3.96731E-73 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 103 | 239 | 9.6E-52 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 90 | 245 | 6.69E-63 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 94 | 243 | 8.7E-67 | IPR016135 |
| SMART | SM00212 | ubc_7 | 102 | 245 | 7.7E-67 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 99 | 245 | 59.658169 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 172 | 187 | - | IPR023313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 224 | 241 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 218 | 247 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G14400.1 | ubiquitin carrier protein 1. ubiquitin carrier protein | 0 |
| RefSeq | XP_006417014.1 | ubiquitin-conjugating enzyme E2 1 [Eutrema salsugineum] | 0 |
| P25865 | Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana OX=3702 GN=UBC1 PE=1 SV=1 | 0 | |
| TrEMBL | V4KZ97 | UBC core domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10008589mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology