Basic Information
Locus ID:
Thhalv10008431m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
U-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_5 | 15451895 | 15454185 | - | Thhalv10008431m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 31,356.16 Da | 50.38 | 84.17 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 206 | 247 | 5.47051E-22 | - |
| CDD | cd01989 | STK_N | 35 | 158 | 9.46643E-36 | - |
| Pfam | PF04564 | U-box domain | 203 | 272 | 1.4E-19 | IPR003613 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 36 | 130 | 4.44E-5 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 201 | 273 | 1.01E-25 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 185 | 277 | 4.7E-27 | IPR013083 |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 9 | 151 | 2.7E-6 | IPR014729 |
| SMART | SM00504 | Ubox_2 | 205 | 268 | 6.8E-24 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 201 | 275 | 36.967945 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G01680.1 | plant U-box 54. | 0 |
| RefSeq | XP_006418444.1 | U-box domain-containing protein 54 [Eutrema salsugineum] | 0 |
| Q9LQ92 | U-box domain-containing protein 54 OS=Arabidopsis thaliana OX=3702 GN=PUB54 PE=2 SV=1 | 0 | |
| TrEMBL | V4L3D4 | U-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10008431mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G01660.1, AT1G01670.1, AT1G01680.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10007636m.g.v1.0, Thhalv10007902m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g00630.v2.2, Sp1g00640.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g036900.2N, BniB03g036910.2N, BniB08g030000.2N |