Basic Information
Locus ID:
Thhalv10008430m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
zinc-RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_5 | 8855253 | 8856803 | + | Thhalv10008430m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.65 | 30,317.29 Da | 52.56 | 76.15 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 74 | 118 | 1.71176E-29 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 75 | 116 | 4.4E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 72 | 129 | 9.3E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 38 | 130 | 2.5E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 76 | 116 | 1.4E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 76 | 117 | 13.43347 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 91 | 100 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 131 | 163 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006416519.1 | RING finger protein 5 [Eutrema salsugineum] | 0 |
| Q09463 | E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1 | 0 | |
| TrEMBL | V4KXV3 | RING-type E3 ubiquitin transferase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10008430mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology