Basic Information
Locus ID:
Thhalv10007982m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_5 | 9929552 | 9932544 | - | Thhalv10007982m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.34 | 39,505.39 Da | 52.85 | 78.20 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 2.5461E-27 | - |
| CDD | cd14379 | UBA1_Rad23_plant | 139 | 188 | 5.75169E-30 | - |
| Pfam | PF00627 | UBA/TS-N domain | 145 | 183 | 8.0E-15 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 323 | 358 | 6.4E-12 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 2.6E-15 | IPR000626 |
| Pfam | PF09280 | XPC-binding domain | 240 | 295 | 1.3E-23 | IPR015360 |
| SUPERFAMILY | SSF46934 | UBA-like | 141 | 190 | 8.82E-13 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 84 | 5.99E-20 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 302 | 364 | 3.19E-15 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 236 | 304 | 5.76E-24 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 314 | 364 | 7.1E-24 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 138 | 188 | 1.1E-21 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 2.0E-25 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 230 | 295 | 7.3E-27 | IPR036353 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 4.7E-19 | IPR000626 |
| SMART | SM00165 | uba_6 | 145 | 185 | 1.1E-4 | IPR015940 |
| SMART | SM00165 | uba_6 | 323 | 360 | 2.2E-8 | IPR015940 |
| SMART | SM00727 | CBM | 238 | 281 | 9.6E-7 | IPR006636 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 366 | 3.0E-122 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 321 | 361 | 15.390351 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 143 | 186 | 12.860156 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 18.344984 | IPR000626 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 334 | 348 | 1.5E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 349 | 364 | 1.5E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 317 | 333 | 1.5E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 266 | 288 | 1.5E-33 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 102 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 116 | 139 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G16190.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_006416841.1 | probable ubiquitin receptor RAD23a [Eutrema salsugineum] | 0 |
| Q84L32 | Probable ubiquitin receptor RAD23a OS=Arabidopsis thaliana OX=3702 GN=RAD23A PE=2 SV=2 | 0 | |
| TrEMBL | V4KV39 | Ubiquitin receptor RAD23 OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10007982mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology