Basic Information
Locus ID:
Thhalv10007902m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_5 | 15448180 | 15451372 | - | Thhalv10007902m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.95 | 43,996.33 Da | 58.28 | 76.03 | -0.74 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 312 | 353 | 9.76059E-23 | - |
| CDD | cd01989 | STK_N | 1 | 112 | 2.22045E-28 | - |
| Pfam | PF04564 | U-box domain | 309 | 378 | 7.2E-17 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 305 | 381 | 2.26E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 305 | 384 | 5.4E-24 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 311 | 374 | 1.2E-20 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 307 | 381 | 35.216499 | IPR003613 |
| Coils | Coil | Coil | 263 | 283 | - | - |
| Coils | Coil | Coil | 220 | 254 | - | - |
| Coils | Coil | Coil | 179 | 211 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G01670.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006418443.1 | U-box domain-containing protein 56 isoform X2 [Eutrema salsugineum] | 0 |
| Q8GXQ7 | U-box domain-containing protein 56 OS=Arabidopsis thaliana OX=3702 GN=PUB56 PE=2 SV=1 | 0 | |
| TrEMBL | V4MWP1 | U-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10007902mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G01660.1, AT1G01670.1, AT1G01680.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10007636m.g.v1.0, Thhalv10007902m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g00630.v2.2, Sp1g00640.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g036900.2N, BniB03g036910.2N, BniB08g030000.2N |