Basic Information
Locus ID:
Thhalv10007833m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Leucine-rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_5 | 14780985 | 14782567 | - | Thhalv10007833m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.94 | 43,197.45 Da | 41.68 | 104.94 | 0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 28 | 66 | 5.2E-8 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 147 | 168 | 0.032 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 28 | 367 | 1.02E-44 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 192 | 261 | 3.5E-13 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 262 | 368 | 1.0E-11 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 28 | 191 | 8.4E-37 | IPR032675 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 147 | 160 | 6.5E-6 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 237 | 250 | 6.5E-6 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G03440.1 | Leucine-rich repeat (LRR) family protein. | 0 |
| RefSeq | XP_006418235.1 | LRR receptor-like serine/threonine-protein kinase ERL1 [Eutrema salsugineum] | 0 |
| TrEMBL | V4LA05 | LRRNT_2 domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10007833mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology