Basic Information
Locus ID:
Thhalv10007746m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Oligouridylate-binding protein 1B
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_5 | 9528366 | 9532123 | + | Thhalv10007746m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.21 | 45,597.76 Da | 46.88 | 66.45 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12619 | RRM2_PUB1 | 138 | 212 | 2.46396E-51 | - |
| CDD | cd12354 | RRM3_TIA1_like | 258 | 333 | 2.13944E-34 | - |
| CDD | cd12352 | RRM1_TIA1_like | 54 | 124 | 3.94574E-36 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 260 | 326 | 1.1E-10 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 139 | 209 | 2.0E-17 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 54 | 120 | 5.1E-12 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 249 | 348 | 1.21E-19 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 132 | 220 | 7.52E-27 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 36 | 130 | 1.75E-23 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 134 | 235 | 2.1E-24 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 133 | 2.3E-23 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 238 | 337 | 4.5E-20 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 138 | 211 | 1.3E-23 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 259 | 329 | 2.1E-15 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 53 | 122 | 4.2E-16 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 52 | 126 | 15.186867 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 258 | 333 | 14.197654 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 137 | 215 | 17.233515 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 215 | 254 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_006416710.1 | oligouridylate-binding protein 1B isoform X1 [Eutrema salsugineum] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | V4L5P5 | Oligouridylate-binding protein 1-like OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10007746mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology