Basic Information
Locus ID:
Thhalv10007690m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
SH3 domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_5 | 3559484 | 3562384 | + | Thhalv10007690m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.98 | 48,755.94 Da | 49.26 | 76.29 | -0.82 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14604 | Variant SH3 domain | 365 | 413 | 4.9E-12 | IPR001452 |
| SUPERFAMILY | SSF103657 | BAR/IMD domain-like | 43 | 254 | 4.97E-27 | IPR027267 |
| SUPERFAMILY | SSF50044 | SH3-domain | 360 | 419 | 1.06E-15 | IPR036028 |
| Gene3D | G3DSA:1.20.1270.60 | Arfaptin homology (AH) domain/BAR domain | 42 | 258 | 5.0E-11 | IPR027267 |
| Gene3D | G3DSA:2.30.30.40 | SH3 Domains | 342 | 428 | 1.4E-16 | - |
| SMART | SM00326 | SH3_2 | 361 | 416 | 2.9E-13 | IPR001452 |
| ProSiteProfiles | PS50002 | Src homology 3 (SH3) domain profile. | 358 | 417 | 20.315208 | IPR001452 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 275 | 348 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 288 | 303 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 333 | 348 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 304 | 332 | - | - |
| Coils | Coil | Coil | 189 | 209 | - | - |
| Coils | Coil | Coil | 1 | 21 | - | - |
| Coils | Coil | Coil | 145 | 179 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31440.1 | SH3 domain-containing protein. | 0 |
| RefSeq | XP_006415327.1 | SH3 domain-containing protein 1 [Eutrema salsugineum] | 0 |
| Q9C865 | SH3 domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=SH3P1 PE=1 SV=1 | 0 | |
| TrEMBL | V4K7T4 | SH3 domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10007690mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology