Basic Information
Locus ID:
Thhalv10007631m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_5 | 14239387 | 14241338 | + | Thhalv10007631m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.43 | 49,839.44 Da | 53.59 | 70.81 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 31 | 116 | 3.81212E-47 | - |
| CDD | cd01390 | HMGB-UBF_HMG-box | 259 | 323 | 1.33977E-23 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 259 | 326 | 9.5E-16 | IPR009071 |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 33 | 116 | 8.2E-16 | IPR001606 |
| SUPERFAMILY | SSF46774 | ARID-like | 28 | 128 | 4.32E-27 | IPR036431 |
| SUPERFAMILY | SSF47095 | HMG-box | 252 | 330 | 5.24E-22 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 23 | 131 | 9.5E-24 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 243 | 334 | 1.2E-21 | IPR036910 |
| SMART | SM01014 | ARID_2 | 26 | 116 | 5.6E-28 | - |
| SMART | SM00501 | bright_3 | 30 | 121 | 7.8E-25 | IPR001606 |
| SMART | SM00398 | hmgende2 | 258 | 327 | 3.7E-20 | IPR009071 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 259 | 326 | 15.787394 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 29 | 120 | 24.941973 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 215 | 267 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 361 | 436 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 215 | 237 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 239 | 253 | - | - |
| Coils | Coil | Coil | 308 | 328 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_006418086.2 | high mobility group B protein 15 [Eutrema salsugineum] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | V4KYH3 | High mobility group B protein 15-like OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10007631mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology