Basic Information
Locus ID:
Thhalv10007551m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
No apical meristem (NAM) protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_5 | 6293580 | 6296221 | - | Thhalv10007551m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.80 | 53,005.58 Da | 41.78 | 60.92 | -0.94 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02365 | No apical meristem (NAM) protein | 59 | 192 | 7.9E-19 | IPR003441 |
| SUPERFAMILY | SSF101941 | NAC domain | 43 | 211 | 1.07E-37 | IPR036093 |
| Gene3D | G3DSA:2.170.150.80 | NAC domain | 67 | 216 | 7.3E-29 | IPR036093 |
| ProSiteProfiles | PS51005 | NAC domain profile. | 58 | 211 | 31.407475 | IPR003441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 320 | 337 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 301 | 365 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 338 | 354 | - | - |
| Coils | Coil | Coil | 318 | 353 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G25580.1 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein. Encodes suppressor of gamma response 1 (SOG1), a putative transcription factor governing multiple responses to DNA damage. | 0 |
| RefSeq | XP_006415888.1 | SUPPRESSOR OF GAMMA RESPONSE 1 [Eutrema salsugineum] | 0 |
| Q6NQK2 | SUPPRESSOR OF GAMMA RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=SOG1 PE=1 SV=1 | 0 | |
| TrEMBL | V4MR78 | NAC domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10007551mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology