Basic Information
Locus ID:
Thhalv10007293m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_5 | 8997208 | 9000754 | + | Thhalv10007293m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.86 | 61,648.14 Da | 34.39 | 87.82 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 62 | 320 | 6.68927E-136 | - |
| Pfam | PF00069 | Protein kinase domain | 65 | 321 | 1.9E-74 | IPR000719 |
| Pfam | PF13499 | EF-hand domain pair | 367 | 428 | 2.0E-8 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 442 | 502 | 2.2E-11 | IPR002048 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 60 | 329 | 2.29E-86 | IPR011009 |
| SUPERFAMILY | SSF47473 | EF-hand | 349 | 528 | 2.66E-42 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 330 | 505 | 4.3E-50 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 149 | 329 | 2.0E-59 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 64 | 148 | 6.2E-28 | - |
| SMART | SM00054 | efh_1 | 440 | 468 | 0.06 | IPR002048 |
| SMART | SM00054 | efh_1 | 476 | 504 | 6.7E-7 | IPR002048 |
| SMART | SM00054 | efh_1 | 368 | 396 | 9.3E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 404 | 432 | 7.5E-5 | IPR002048 |
| SMART | SM00220 | serkin_6 | 63 | 321 | 1.1E-98 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 364 | 399 | 14.513405 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 472 | 507 | 13.453381 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 400 | 435 | 10.747526 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 436 | 471 | 12.337564 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 63 | 321 | 48.470444 | IPR000719 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 485 | 497 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 377 | 389 | - | IPR018247 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 69 | 92 | - | IPR017441 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 413 | 425 | - | IPR018247 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 183 | 195 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 13 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18890.1 | calcium-dependent protein kinase 1. encodes a calcium-dependent protein kinase whose gene expression is induced by dehydration and high salt. Kinase activity could not be detected in vitro. | 0 |
| RefSeq | XP_006416554.1 | calcium-dependent protein kinase 10 [Eutrema salsugineum] | 0 |
| Q9M9V8 | Calcium-dependent protein kinase 10 OS=Arabidopsis thaliana OX=3702 GN=CPK10 PE=1 SV=1 | 0 | |
| TrEMBL | E4MX56 | mRNA, clone: RTFL01-16-P22 OS=Eutrema halophilum OX=98038 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology