Basic Information
Locus ID:
Thhalv10007273m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_5 | 13824341 | 13829815 | - | Thhalv10007273m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.12 | 62,591.28 Da | 51.97 | 61.87 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 137 | 187 | 3.1E-17 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 285 | 333 | 7.9E-10 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 206 | 268 | 4.2E-16 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 287 | 335 | 1.45E-17 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 206 | 275 | 9.81E-13 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 132 | 218 | 1.65E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 131 | 220 | 1.6E-18 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 264 | 517 | 8.7E-87 | - |
| SMART | SM00647 | ibrneu5 | 281 | 342 | 0.12 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 206 | 268 | 5.6E-25 | IPR002867 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 137 | 183 | 9.538678 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 133 | 346 | 53.364555 | IPR044066 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 38 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 518 | 534 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 38 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 518 | 552 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
| Coils | Coil | Coil | 347 | 374 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05890.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006417975.1 | probable E3 ubiquitin-protein ligase ARI5 isoform X2 [Eutrema salsugineum] | 0 |
| Q8L829 | Probable E3 ubiquitin-protein ligase ARI5 OS=Arabidopsis thaliana OX=3702 GN=ARI5 PE=2 SV=1 | 0 | |
| TrEMBL | V4L978 | RBR-type E3 ubiquitin transferase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10007273mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology