Basic Information
Locus ID:
Thhalv10007226m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Short Name:
NTMC2T2.1
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_5 | 13980398 | 13984970 | - | Thhalv10007226m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.72 | 64,013.22 Da | 30.36 | 102.50 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 272 | 374 | 4.41976E-25 | - |
| CDD | cd00030 | C2 | 445 | 545 | 8.44249E-27 | - |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 80 | 256 | 2.7E-14 | IPR039010 |
| Pfam | PF00168 | C2 domain | 443 | 545 | 2.9E-26 | IPR000008 |
| Pfam | PF00168 | C2 domain | 271 | 374 | 2.7E-23 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 268 | 399 | 5.69E-30 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 440 | 560 | 3.27E-33 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 263 | 398 | 6.1E-32 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 424 | 562 | 1.2E-35 | IPR035892 |
| SMART | SM00239 | C2_3c | 444 | 542 | 1.6E-25 | IPR000008 |
| SMART | SM00239 | C2_3c | 271 | 371 | 1.5E-23 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 425 | 543 | 21.408024 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 251 | 372 | 20.229141 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 75 | 257 | 29.065102 | IPR031468 |
| PRINTS | PR00360 | C2 domain signature | 460 | 472 | 2.2E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 508 | 516 | 2.2E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 486 | 499 | 2.2E-6 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_024008634.1 | synaptotagmin-5 [Eutrema salsugineum] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | V4L9B7 | Synaptotagmin-5-like OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10007226mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology