Basic Information
Locus ID:
Thhalv10007195m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Short Name:
AFB3
Description:
auxin signaling f-box
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_5 | 11167541 | 11169694 | + | Thhalv10007195m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.23 | 64,672.96 Da | 45.11 | 97.71 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 61 | 107 | 2.2E-23 | IPR041101 |
| Pfam | PF13516 | Leucine Rich repeat | 149 | 165 | 0.046 | IPR001611 |
| Pfam | PF18511 | F-box | 2 | 42 | 3.1E-18 | IPR041567 |
| SUPERFAMILY | SSF52047 | RNI-like | 17 | 552 | 1.05E-33 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 41 | 577 | 3.4E-175 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 40 | 2.6E-16 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12820.1 | auxin signaling F-box 3. Auxin receptor involved in primary and lateral root growth inhibition in response to nitrate. Target of miR393. Induced by nitrate in primary roots. | 0 |
| RefSeq | XP_006417190.1 | protein AUXIN SIGNALING F-BOX 3 [Eutrema salsugineum] | 0 |
| Q9LPW7 | Protein AUXIN SIGNALING F-BOX 3 OS=Arabidopsis thaliana OX=3702 GN=AFB3 PE=1 SV=1 | 0 | |
| TrEMBL | V4L724 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10007195mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology