Basic Information
Locus ID:
Thhalv10007076m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Salt stress response/antifungal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_5 | 8951175 | 8953573 | - | Thhalv10007076m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.00 | 69,997.79 Da | 43.13 | 83.11 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 349 | 592 | 2.7E-41 | IPR001245 |
| Pfam | PF01657 | Salt stress response/antifungal | 88 | 145 | 3.8E-8 | IPR002902 |
| Pfam | PF01657 | Salt stress response/antifungal | 169 | 254 | 6.3E-11 | IPR002902 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 324 | 614 | 2.97E-62 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 309 | 399 | 6.0E-15 | - |
| Gene3D | G3DSA:3.30.430.20 | - | 160 | 257 | 5.3E-13 | IPR038408 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 400 | 604 | 3.3E-54 | - |
| Gene3D | G3DSA:3.30.430.20 | - | 16 | 148 | 1.2E-10 | IPR038408 |
| SMART | SM00220 | serkin_6 | 338 | 593 | 4.4E-12 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 41 | 148 | 12.940427 | IPR002902 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 295 | 610 | 29.022062 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 154 | 257 | 13.77322 | IPR002902 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 445 | 457 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19090.1 | receptor-like serine/threonine kinase 2. receptor-like serine/threonine kinase (RKF2) | 0 |
| RefSeq | XP_024008813.1 | cysteine-rich receptor-like protein kinase 1 [Eutrema salsugineum] | 0 |
| Q9LMB9 | Cysteine-rich receptor-like protein kinase 1 OS=Arabidopsis thaliana OX=3702 GN=CRK1 PE=2 SV=2 | 0 | |
| TrEMBL | V4KXX6 | Cysteine-rich receptor-like protein kinase 1 OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10007076mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G19090.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007076m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g17010.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g033650.2N |