Basic Information
Locus ID:
Thhalv10007075m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_5 | 2350776 | 2353047 | + | Thhalv10007075m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.25 | 67,356.31 Da | 44.36 | 64.76 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd11449 | bHLH_AtAIB_like | 444 | 520 | 7.73375E-49 | - |
| Pfam | PF00010 | Helix-loop-helix DNA-binding domain | 451 | 496 | 1.7E-10 | IPR011598 |
| Pfam | PF14215 | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 64 | 248 | 9.1E-55 | IPR025610 |
| SUPERFAMILY | SSF47459 | HLH, helix-loop-helix DNA-binding domain | 448 | 519 | 1.31E-17 | IPR036638 |
| Gene3D | G3DSA:4.10.280.10 | - | 439 | 527 | 1.1E-17 | IPR036638 |
| SMART | SM00353 | finulus | 453 | 502 | 3.9E-16 | IPR011598 |
| ProSiteProfiles | PS50888 | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 447 | 496 | 17.110519 | IPR011598 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 376 | 392 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 309 | 333 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 107 | 128 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 441 | 457 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 350 | 394 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 409 | 457 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 414 | 433 | - | - |
| Coils | Coil | Coil | 493 | 520 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32640.1 | Basic helix-loop-helix (bHLH) DNA-binding family protein. Encodes a MYC-related transcriptional activator with a typical DNA binding domain of a basic helix-loop-helix leucine zipper motif. Binds to an extended G-Box promoter motif. Its transcription is induced by dehydration stress and ABA treatment. Negative regulator of blue lightmediated photomorphogenic growth and blue and far-red-lightregulated gene expression. Positive regulator of lateral root formation. Regulates diverse JA-dependent functions. Negatively regulates Trp metabolism and biosynthesis of Trp-derived secondary metabolites. Positively regulates flavonoid biosynthesis, resistance to insects, and response to oxidative stress. Regulates other transcription factors, and negatively regulates its own expression. | 0 |
| RefSeq | XP_006415166.1 | transcription factor MYC2 [Eutrema salsugineum] | 0 |
| Q39204 | Transcription factor MYC2 OS=Arabidopsis thaliana OX=3702 GN=MYC2 PE=1 SV=2 | 0 | |
| TrEMBL | V4KQI0 | BHLH domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10007075mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology