Basic Information
Locus ID:
Thhalv10006954m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_5 | 3571773 | 3576578 | - | Thhalv10006954m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.76 | 79,398.71 Da | 44.77 | 85.72 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 280 | 416 | 1.68711E-70 | - |
| CDD | cd18015 | DEXHc_RecQ1 | 71 | 279 | 1.09812E-135 | - |
| Pfam | PF09382 | RQC domain | 481 | 583 | 5.2E-5 | IPR018982 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 91 | 259 | 2.8E-19 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 302 | 406 | 1.3E-15 | IPR001650 |
| Pfam | PF16124 | RecQ zinc-binding | 419 | 475 | 2.2E-12 | IPR032284 |
| Pfam | PF00570 | HRDC domain | 600 | 659 | 8.3E-9 | IPR002121 |
| SUPERFAMILY | SSF47819 | HRDC-like | 601 | 662 | 6.98E-5 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 127 | 423 | 4.47E-55 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 50 | 279 | 1.1E-88 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 597 | 663 | 2.0E-11 | IPR044876 |
| Gene3D | G3DSA:1.10.10.10 | - | 480 | 580 | 6.6E-25 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 280 | 476 | 4.6E-64 | IPR027417 |
| SMART | SM00490 | helicmild6 | 326 | 407 | 1.7E-25 | IPR001650 |
| SMART | SM00487 | ultradead3 | 85 | 288 | 1.4E-28 | IPR014001 |
| SMART | SM00956 | RQC_2 | 484 | 581 | 7.4E-4 | IPR018982 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 82 | 507 | 3.6E-161 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 97 | 272 | 23.486277 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 297 | 449 | 19.108353 | IPR001650 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 591 | 670 | 12.992527 | IPR002121 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 664 | 706 | - | - |
| Coils | Coil | Coil | 3 | 30 | - | - |
| Coils | Coil | Coil | 512 | 532 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.1 | RECQ helicase L2. Encodes a (d)NTP-dependent 3'->5' DNA helicase. This protein can also disrupt D loop structures and may mediate branch migration of Holliday junctions when tested in vitro. The unwinding activity of the enzyme depends on the presence of divalent cations (Mg2+, Mn2+, or Ca2+, but not Zn2+).(d)NTPs are also required with ATP and dATP supporting the greatest amount of DNA unwinding in vitro. | 0 |
| RefSeq | XP_006415334.1 | mediator of RNA polymerase II transcription subunit 34 [Eutrema salsugineum] | 0 |
| Q9FT73 | ATP-dependent DNA helicase Q-like 2 OS=Arabidopsis thaliana OX=3702 GN=RECQL2 PE=1 SV=1 | 0 | |
| TrEMBL | V4KUH0 | ATP-dependent DNA helicase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10006954mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology