Basic Information
Locus ID:
Thhalv10006945m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Poly(A) polymerase central domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_5 | 9319844 | 9324241 | + | Thhalv10006945m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.96 | 80,274.75 Da | 46.31 | 75.36 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 54 | 206 | 4.02022E-27 | - |
| Pfam | PF01909 | Nucleotidyltransferase domain | 79 | 145 | 7.4E-11 | IPR002934 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 12 | 356 | 3.4E-109 | IPR007012 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 359 | 416 | 1.4E-12 | IPR007010 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 207 | 356 | 2.88E-62 | - |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 11 | 205 | 1.5E-52 | IPR043519 |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 358 | 482 | 4.71E-37 | IPR011068 |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 44 | 200 | 3.3E-158 | IPR043519 |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 358 | 472 | 1.2E-27 | - |
| Gene3D | G3DSA:1.10.1410.10 | - | 12 | 354 | 3.3E-158 | - |
| PIRSF | PIRSF018425 | PolyA_polymerase | 1 | 635 | 7.1E-234 | IPR014492 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 507 | 529 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 490 | 554 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 530 | 549 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17980.1 | poly(A) polymerase 1. Encodes a poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_006416650.1 | nuclear poly(A) polymerase 1 [Eutrema salsugineum] | 0 |
| Q9LMT2 | Nuclear poly(A) polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=PAPS1 PE=1 SV=1 | 0 | |
| TrEMBL | V4L5J5 | Poly(A) polymerase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10006945mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology