Basic Information
Locus ID:
Thhalv10006850m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Short Name:
CMT1
Description:
C-5 cytosine-specific DNA methylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_5 | 11751063 | 11755954 | + | Thhalv10006850m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.26 | 88,782.40 Da | 43.04 | 76.24 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 325 | 382 | 1.46677E-26 | - |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 396 | 748 | 9.0E-33 | IPR001525 |
| Pfam | PF01426 | BAH domain | 71 | 184 | 6.4E-14 | IPR001025 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 328 | 381 | 6.8E-9 | IPR023780 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 313 | 382 | 2.57E-12 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 215 | 750 | 1.51E-74 | IPR029063 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 173 | 548 | 3.0E-150 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 549 | 717 | 4.2E-57 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 5 | 172 | 2.6E-51 | IPR043151 |
| SMART | SM00439 | BAH_4 | 68 | 187 | 3.6E-25 | IPR001025 |
| SMART | SM00298 | chromo_7 | 325 | 385 | 5.1E-11 | IPR000953 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 213 | 758 | 43.134647 | IPR001525 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 326 | 380 | 12.014501 | IPR000953 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 68 | 187 | 20.87488 | IPR001025 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 350 | 370 | - | IPR023779 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 486 | 499 | 2.8E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 440 | 454 | 2.8E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 214 | 230 | 2.8E-12 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 295 | 323 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 57 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 296 | 323 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 57 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80740.1 | chromomethylase 1. ecotype Kl-0 chromomethylase (CMT1). A plant line expressing an RNAi construct directed against DMT4 has reduced agrobacterium-mediated tumor formation. | 0 |
| RefSeq | XP_006417360.1 | putative DNA (cytosine-5)-methyltransferase CMT1 [Eutrema salsugineum] | 0 |
| O49139 | Putative DNA (cytosine-5)-methyltransferase CMT1 OS=Arabidopsis thaliana OX=3702 GN=CMT1 PE=5 SV=2 | 0 | |
| TrEMBL | V4L7G8 | Chromo domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10006850mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology