Basic Information
Locus ID:
Thhalv10006750m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_5 | 2177306 | 2182036 | - | Thhalv10006750m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.89 | 101,263.32 Da | 48.25 | 78.14 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 741 | 885 | 4.92146E-55 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 300 | 884 | 3.0E-86 | IPR001394 |
| Pfam | PF06337 | DUSP domain | 43 | 134 | 1.1E-23 | IPR006615 |
| SUPERFAMILY | SSF143791 | DUSP-like | 17 | 134 | 3.4E-29 | IPR035927 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 297 | 887 | 2.16E-111 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 284 | 493 | 2.0E-69 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 148 | 234 | 5.1E-7 | - |
| Gene3D | G3DSA:3.30.2230.10 | - | 8 | 147 | 1.7E-37 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 698 | 895 | 5.9E-59 | - |
| SMART | SM00695 | dusp | 38 | 137 | 4.0E-43 | IPR006615 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 19 | 134 | 18.876234 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 299 | 887 | 58.757511 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 829 | 846 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 300 | 315 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 95 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 69 | 95 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32850.1 | ubiquitin-specific protease 11. | 0 |
| RefSeq | XP_006415146.1 | putative ubiquitin carboxyl-terminal hydrolase 11 [Eutrema salsugineum] | 0 |
| Q9MAQ3 | Putative ubiquitin carboxyl-terminal hydrolase 11 OS=Arabidopsis thaliana OX=3702 GN=UBP11 PE=3 SV=2 | 0 | |
| TrEMBL | V4KQG1 | Ubiquitin carboxyl-terminal hydrolase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10006750mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology