Basic Information
Locus ID:
Thhalv10006733m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
mitotic sister chromatid cohesion
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_5 | 9985632 | 9990167 | - | Thhalv10006733m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 101,752.16 Da | 53.50 | 70.98 | -0.90 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF48371 | ARM repeat | 21 | 237 | 4.53E-7 | IPR016024 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 575 | 617 | 2.86E-7 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 562 | 624 | 4.6E-12 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 328 | 342 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 530 | 549 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 357 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 410 | 573 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 492 | 520 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 656 | 919 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 666 | 696 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 369 | 385 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 550 | 573 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 700 | 732 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 739 | 908 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 300 | 385 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 447 | 485 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15940.1 | Tudor/PWWP/MBT superfamily protein. | 0 |
| RefSeq | XP_006416861.1 | glutamic acid-rich protein [Eutrema salsugineum] | 0 |
| Q9S9P0 | Sister chromatid cohesion protein PDS5 homolog E OS=Arabidopsis thaliana OX=3702 GN=PDS5E PE=2 SV=1 | 0 | |
| TrEMBL | V4KBY0 | Tudor domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10006733mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology