Basic Information
Locus ID:
Thhalv10006713m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Belongs to the glycosyl hydrolase 17 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_5 | 11584573 | 11589634 | + | Thhalv10006713m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.52 | 104,462.31 Da | 41.55 | 85.95 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09080 | TDP2 | 681 | 946 | 9.75286E-86 | - |
| Pfam | PF00332 | Glycosyl hydrolases family 17 | 49 | 368 | 4.3E-73 | IPR000490 |
| Pfam | PF03372 | Endonuclease/Exonuclease/phosphatase family | 684 | 896 | 8.8E-11 | IPR005135 |
| Pfam | PF07983 | X8 domain | 386 | 457 | 1.8E-21 | IPR012946 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 566 | 593 | 4.71E-5 | IPR036443 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 49 | 368 | 9.17E-80 | IPR017853 |
| SUPERFAMILY | SSF56219 | DNase I-like | 681 | 947 | 6.67E-28 | IPR036691 |
| Gene3D | G3DSA:4.10.1060.10 | - | 521 | 561 | 2.7E-6 | - |
| Gene3D | G3DSA:2.30.30.380 | - | 563 | 607 | 3.6E-6 | - |
| Gene3D | G3DSA:1.20.58.1040 | - | 379 | 488 | 2.1E-11 | - |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 677 | 947 | 1.3E-77 | IPR036691 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 48 | 375 | 5.2E-108 | - |
| SMART | SM00768 | X8_cls | 385 | 470 | 6.9E-52 | IPR012946 |
| SMART | SM00547 | zf_4 | 569 | 593 | 2.0E-4 | IPR001876 |
| SMART | SM00547 | zf_4 | 529 | 554 | 2.3E-6 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 571 | 590 | - | IPR001876 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11820.2 | O-Glycosyl hydrolases family 17 protein. | 0 |
| RefSeq | XP_024007813.1 | glucan endo-1,3-beta-glucosidase 1 [Eutrema salsugineum] | 0 |
| O65399 | Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana OX=3702 GN=At1g11820 PE=2 SV=3 | 0 | |
| TrEMBL | V4MUJ9 | glucan endo-1,3-beta-D-glucosidase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10006713mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology