Basic Information
Locus ID:
Thhalv10006712m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_5 | 13502266 | 13507862 | + | Thhalv10006712m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.75 | 104,765.40 Da | 41.11 | 92.88 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 626 | 892 | 4.32393E-92 | - |
| Pfam | PF13855 | Leucine rich repeat | 151 | 211 | 1.3E-6 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 33 | 69 | 2.1E-8 | IPR013210 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 623 | 889 | 1.0E-44 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 605 | 925 | 1.37E-76 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 44 | 393 | 1.33E-54 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 696 | 914 | 2.3E-53 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 590 | 695 | 6.9E-37 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 31 | 289 | 1.7E-64 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 290 | 428 | 4.5E-13 | IPR032675 |
| SMART | SM00220 | serkin_6 | 620 | 892 | 5.1E-34 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 620 | 892 | 37.587265 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 626 | 648 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 740 | 752 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 903 | 937 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 902 | 950 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G06840.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_006417874.1 | probable LRR receptor-like serine/threonine-protein kinase At1g06840 [Eutrema salsugineum] | 0 |
| C0LGD7 | Probable LRR receptor-like serine/threonine-protein kinase At1g06840 OS=Arabidopsis thaliana OX=3702 GN=At1g06840 PE=1 SV=2 | 0 | |
| TrEMBL | V4L1S8 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10006712mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology