Basic Information
Locus ID:
Thhalv10006699m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_5 | 11850337 | 11855638 | - | Thhalv10006699m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.84 | 107,978.88 Da | 48.67 | 77.44 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 2 | 208 | 8.8297E-59 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 83 | 119 | 1.5E-9 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 796 | 967 | 6.1E-42 | IPR028021 |
| Pfam | PF00400 | WD domain, G-beta repeat | 123 | 161 | 1.0E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 42 | 77 | 4.1E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 2 | 35 | 0.031 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 2 | 242 | 1.89E-60 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 119 | 9.5E-39 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 120 | 360 | 4.1E-23 | IPR015943 |
| SMART | SM00320 | WD40_4 | 38 | 77 | 2.8E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 80 | 119 | 2.1E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 122 | 161 | 4.7E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1 | 35 | 3.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 164 | 202 | 0.32 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 129 | 164 | 11.945589 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 45 | 86 | 15.521181 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 3 | 44 | 14.117617 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 3 | 37 | 10.574686 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 87 | 124 | 13.342854 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 45 | 79 | 12.182859 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 129 | 170 | 15.019908 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 87 | 128 | 17.392599 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 148 | 162 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 64 | 78 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 106 | 120 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 64 | 78 | 6.2E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 106 | 120 | 6.2E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 148 | 162 | 6.2E-8 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 1 | 970 | 15.341 | IPR026962 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 693 | 717 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 344 | 366 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 693 | 731 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 504 | 525 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 332 | 382 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 559 | 586 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 398 | 417 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11160.3 | - | 0 |
| RefSeq | XP_024008334.1 | katanin p80 WD40 repeat-containing subunit B1 homolog [Eutrema salsugineum] | 0 |
| A0A1P8AW69 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.1 OS=Arabidopsis thaliana OX=3702 GN=KTN80.1 PE=1 SV=1 | 0 | |
| TrEMBL | V4L7J2 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10006699mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology