Basic Information
Locus ID:
Thhalv10006677m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_5 | 5294397 | 5297873 | - | Thhalv10006677m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.24 | 109,638.20 Da | 36.91 | 100.21 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 21 | 59 | 3.4E-10 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 113 | 132 | 1.2 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 138 | 195 | 6.2E-8 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 682 | 912 | 1.7E-41 | IPR000719 |
| SUPERFAMILY | SSF52047 | RNI-like | 328 | 597 | 5.57E-49 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 672 | 963 | 7.01E-72 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 32 | 365 | 4.42E-63 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 179 | 246 | 4.1E-12 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 771 | 991 | 7.0E-60 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 247 | 305 | 1.1E-16 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 664 | 770 | 3.6E-23 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 306 | 613 | 3.7E-84 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 20 | 178 | 1.1E-45 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 135 | 159 | 250.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 471 | 494 | 410.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 680 | 967 | 2.0E-32 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 183 | 208 | 48.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 280 | 304 | 65.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 87 | 111 | 6.7 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 680 | 967 | 35.707443 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 815 | 827 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 686 | 708 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 967 | 1000 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 971 | 988 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G28440.1 | HAESA-like 1. | 0 |
| RefSeq | XP_006415654.1 | receptor-like protein kinase HSL1 [Eutrema salsugineum] | 0 |
| Q9SGP2 | Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana OX=3702 GN=HSL1 PE=1 SV=1 | 0 | |
| TrEMBL | V4KVH9 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10006677mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology