Basic Information
Locus ID:
Thhalv10006658m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_5 | 12857134 | 12860280 | - | Thhalv10006658m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 113,911.52 Da | 43.74 | 101.81 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 247 | 306 | 1.1E-6 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 103 | 125 | 1.2 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 31 | 75 | 2.6E-7 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 717 | 975 | 8.9E-46 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 319 | 378 | 1.8E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 534 | 593 | 1.7E-8 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 286 | 598 | 7.85E-66 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 707 | 1002 | 8.9E-70 | IPR011009 |
| SUPERFAMILY | SSF52047 | RNI-like | 83 | 388 | 5.18E-64 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 810 | 1018 | 5.4E-57 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 99 | 358 | 4.3E-82 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 714 | 809 | 6.0E-18 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 28 | 98 | 6.9E-10 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 359 | 629 | 3.9E-78 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 390 | 413 | 350.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 293 | 317 | 100.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 341 | 365 | 40.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 437 | 461 | 110.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 197 | 221 | 92.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 532 | 555 | 330.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 556 | 580 | 52.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 715 | 1002 | 3.2E-37 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 462 | 484 | 3.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 101 | 125 | 8.2 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 463 | 484 | 7.157505 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 715 | 1022 | 39.664963 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 852 | 864 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 721 | 746 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G08590.1 | Leucine-rich receptor-like protein kinase family protein. similar to CLV1-like leucine rich repeat transmembrane receptor-like protein kinase (Ipomoea nil) (U77888) | 0 |
| RefSeq | XP_006417669.1 | leucine-rich repeat receptor-like protein kinase PXL1 [Eutrema salsugineum] | 0 |
| Q9FRS6 | Leucine-rich repeat receptor-like protein kinase PXL1 OS=Arabidopsis thaliana OX=3702 GN=PXL1 PE=1 SV=1 | 0 | |
| TrEMBL | V4L156 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10006658mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology