Basic Information
Locus ID:
Thhalv10006649m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
PB1 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_5 | 14298175 | 14301955 | - | Thhalv10006649m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.00 | 118,417.73 Da | 48.36 | 66.81 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13999 | STKc_MAP3K-like | 776 | 1033 | 8.47155E-106 | - |
| CDD | cd06410 | PB1_UP2 | 128 | 223 | 1.28739E-46 | - |
| Pfam | PF00564 | PB1 domain | 141 | 225 | 6.0E-19 | IPR000270 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 773 | 1033 | 1.4E-62 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 758 | 1032 | 1.04E-74 | IPR011009 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 141 | 229 | 1.05E-19 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 763 | 857 | 1.4E-25 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 143 | 226 | 1.1E-11 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 858 | 1045 | 4.8E-52 | - |
| SMART | SM00220 | serkin_6 | 770 | 1037 | 1.0E-55 | IPR000719 |
| SMART | SM00666 | PB1_new | 139 | 226 | 3.0E-31 | IPR000270 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 770 | 1038 | 40.484737 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 776 | 797 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 895 | 907 | - | IPR008271 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1004 | 1026 | 2.7E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 889 | 907 | 2.7E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 852 | 865 | 2.7E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 960 | 982 | 2.7E-13 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 710 | 743 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04700.1 | PB1 domain-containing protein tyrosine kinase. | 0 |
| RefSeq | XP_006418100.1 | uncharacterized protein LOC18994395 [Eutrema salsugineum] | 0 |
| Q9SAJ2 | RAF-like serine/threonine-protein kinase 20 OS=Arabidopsis thaliana OX=3702 GN=RAF20 PE=1 SV=1 | 0 | |
| TrEMBL | V4L9J6 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10006649mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology