Basic Information
Locus ID:
Thhalv10006629m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_5 | 10359559 | 10363080 | + | Thhalv10006629m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.56 | 126,795.34 Da | 38.14 | 83.38 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00590 | RRM_SF | 5 | 60 | 7.95151E-6 | - |
| Pfam | PF05183 | RNA dependent RNA polymerase | 372 | 930 | 5.1E-189 | IPR007855 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 2 | 67 | 1.21E-5 | IPR035979 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 3 | 84 | 8.756981 | IPR000504 |
| ProSiteProfiles | PS50206 | Rhodanese domain profile. | 326 | 355 | 8.56507 | IPR001763 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G14790.1 | RNA-dependent RNA polymerase 1. Encodes RNA-dependent RNA polymerase. While not required for virus-induced post-transcriptional gene silencing (PTGS), it can promote turnover of viral RNAs in infected plants. Nomenclature according to Xie, et al. (2004). Involved in the production of Cucumber Mosaic Virus siRNAs. | 0 |
| RefSeq | XP_006416969.1 | RNA-dependent RNA polymerase 1 [Eutrema salsugineum] | 0 |
| Q9LQV2 | RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1 | 0 | |
| TrEMBL | V4KZ57 | RNA-dependent RNA polymerase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10006629mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology