Basic Information
Locus ID:
Thhalv10006602m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
DNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_5 | 11931024 | 11938172 | + | Thhalv10006602m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.05 | 131,601.14 Da | 49.92 | 76.06 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 637 | 769 | 1.42861E-74 | - |
| CDD | cd17920 | DEXHc_RecQ | 437 | 636 | 2.96329E-104 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 653 | 759 | 6.1E-18 | IPR001650 |
| Pfam | PF00570 | HRDC domain | 1008 | 1073 | 4.6E-15 | IPR002121 |
| Pfam | PF16124 | RecQ zinc-binding | 771 | 851 | 1.9E-15 | IPR032284 |
| Pfam | PF09382 | RQC domain | 859 | 972 | 5.4E-21 | IPR018982 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 448 | 616 | 1.4E-18 | IPR011545 |
| SUPERFAMILY | SSF47819 | HRDC-like | 1004 | 1076 | 1.7E-13 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 421 | 778 | 4.53E-42 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 635 | 901 | 4.09E-58 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 858 | 969 | 1.2E-20 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 637 | 853 | 4.6E-66 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 409 | 636 | 1.4E-92 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 998 | 1083 | 2.9E-22 | IPR044876 |
| SMART | SM00487 | ultradead3 | 442 | 645 | 4.1E-31 | IPR014001 |
| SMART | SM00341 | hrdc7 | 1001 | 1083 | 1.3E-5 | IPR002121 |
| SMART | SM00956 | RQC_2 | 860 | 971 | 7.3E-29 | IPR018982 |
| SMART | SM00490 | helicmild6 | 679 | 760 | 3.7E-27 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 438 | 911 | 5.5E-166 | IPR004589 |
| ProSiteProfiles | PS50206 | Rhodanese domain profile. | 669 | 710 | 8.783937 | IPR001763 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 454 | 629 | 22.832388 | IPR014001 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 1001 | 1083 | 17.511457 | IPR002121 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 654 | 799 | 19.247776 | IPR001650 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 568 | 577 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1092 | 1109 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 335 | 350 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1086 | 1119 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 327 | 350 | - | - |
| Coils | Coil | Coil | 305 | 332 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_024008658.1 | ATP-dependent DNA helicase Q-like 4A [Eutrema salsugineum] | 0 |
| Q8L840 | ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana OX=3702 GN=RECQL4A PE=2 SV=1 | 0 | |
| TrEMBL | V4MUQ2 | DNA helicase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10006602mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology