Basic Information
Locus ID:
Thhalv10006549m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Short Name:
ABCC5
Description:
ABC transporter transmembrane region
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_5 | 14558040 | 14563925 | + | Thhalv10006549m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.87 | 168,536.94 Da | 40.26 | 107.57 | 0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 312 | 599 | 1.01792E-104 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1269 | 1489 | 8.27497E-126 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 625 | 825 | 2.30395E-103 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 952 | 1246 | 1.45139E-94 | IPR044726 |
| Pfam | PF00664 | ABC transporter transmembrane region | 315 | 579 | 5.3E-29 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 955 | 1196 | 8.8E-29 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 643 | 777 | 4.1E-19 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 1288 | 1436 | 8.1E-31 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 620 | 847 | 5.75E-55 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 301 | 607 | 1.11E-40 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 947 | 1253 | 1.44E-49 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1262 | 1501 | 1.41E-67 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 623 | 855 | 3.8E-71 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1254 | 1507 | 1.3E-82 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 913 | 1251 | 2.8E-59 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 278 | 608 | 3.1E-55 | IPR036640 |
| SMART | SM00382 | AAA_5 | 652 | 825 | 6.8E-14 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1297 | 1482 | 4.3E-13 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1271 | 1505 | 17.953979 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 625 | 848 | 23.262743 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 314 | 591 | 37.853073 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 954 | 1224 | 36.031532 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 750 | 764 | - | IPR017871 |
| Coils | Coil | Coil | 472 | 492 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04120.1 | multidrug resistance-associated protein 5. encodes a high-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytate storage. It is a member of MRP subfamily / ABC transporter subfamily C. | 0 |
| RefSeq | XP_006418165.1 | ABC transporter C family member 5 [Eutrema salsugineum] | 0 |
| Q7GB25 | ABC transporter C family member 5 OS=Arabidopsis thaliana OX=3702 GN=ABCC5 PE=2 SV=2 | 0 | |
| TrEMBL | V4L9V6 | ABC-type xenobiotic transporter OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10006549mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology