halophFGD

Basic Information

Locus ID: Thhalv10006535m.g.v1.0

Species & Taxonomic ID: Eutrema salsugineum & 72664

Genome Assembly: GCF_000478725.1

Description: Belongs to the SecA family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
scaffold_5	7927527	7939601	+	Thhalv10006535m.g.v1.0

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.34	202,997.63 Da	42.98	93.99	-0.19

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd16587	RING-HC_TRIM32_C-VII	5	51	7.43326E-23	-
CDD	cd18803	SF2_C_secA	1215	1486	3.36553E-62	IPR044722
CDD	cd17928	DEXDc_SecA	853	1209	6.23589E-123	-
Pfam	PF01043	SecA preprotein cross-linking domain	1049	1153	1.3E-26	IPR011130
Pfam	PF07517	SecA DEAD-like domain	828	1196	1.1E-117	IPR011115
Pfam	PF00400	WD domain, G-beta repeat	521	553	0.039	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	649	684	9.8E-4	IPR001680
Pfam	PF07516	SecA Wing and Scaffold domain	1516	1790	7.2E-44	IPR011116
Pfam	PF13445	RING-type zinc-finger	6	48	1.1E-7	IPR027370
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	175	443	3.55E-7	IPR011009
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	1214	1499	5.43E-41	IPR027417
SUPERFAMILY	SSF57850	RING/U-box	4	65	1.44E-8	-
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	818	1210	1.1E-71	IPR027417
SUPERFAMILY	SSF81767	Pre-protein crosslinking domain of SecA	1041	1162	1.44E-36	IPR036670
SUPERFAMILY	SSF50978	WD40 repeat-like	521	808	8.93E-46	IPR036322
SUPERFAMILY	SSF81886	Helical scaffold and wing domains of SecA	1521	1801	6.28E-40	IPR036266
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	1	81	9.3E-15	IPR013083
Gene3D	G3DSA:2.130.10.10	-	604	831	4.0E-32	IPR015943
Gene3D	G3DSA:3.40.50.300	-	833	1210	4.2E-167	IPR027417
Gene3D	G3DSA:1.10.3060.10	Helical scaffold and wing domains of SecA	1521	1650	1.6E-12	-
Gene3D	G3DSA:3.40.50.300	-	1213	1518	8.2E-77	IPR027417
Gene3D	G3DSA:1.10.3060.10	Helical scaffold and wing domains of SecA	1676	1792	2.3E-15	-
Gene3D	G3DSA:3.90.1440.10	-	1043	1163	4.2E-167	-
Gene3D	G3DSA:2.130.10.10	-	505	603	1.3E-13	IPR015943
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	175	448	2.0E-6	-
SMART	SM00320	WD40_4	602	644	0.0027	IPR001680
SMART	SM00184	ring_2	6	50	7.9E-6	IPR001841
SMART	SM00958	SecA_PP_bind_2	1042	1153	1.7E-42	IPR011130
SMART	SM00320	WD40_4	687	728	100.0	IPR001680
SMART	SM00320	WD40_4	647	684	8.1E-5	IPR001680
SMART	SM00320	WD40_4	556	596	0.11	IPR001680
SMART	SM00320	WD40_4	516	553	0.0039	IPR001680
SMART	SM00320	WD40_4	729	766	7.5	IPR001680
SMART	SM00957	SecA_DEAD_2	818	1197	6.1E-233	IPR011115
TIGRFAM	TIGR00963	secA: preprotein translocase, SecA subunit	839	1626	6.8E-265	IPR000185
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	620	653	9.171722	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	654	686	8.65015	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	654	693	10.909469	IPR001680
ProSiteProfiles	PS51196	SecA family profile.	814	1518	132.165619	IPR014018
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	523	555	8.729241	-
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	6	51	11.854899	IPR001841
ProSiteProfiles	PS51192	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	900	1061	14.954275	IPR014001
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	523	562	11.243651	IPR001680
ProSitePatterns	PS01312	SecA family signature.	1297	1312	-	IPR020937
PRINTS	PR00906	SecA protein signature	981	1001	2.1E-58	IPR000185
PRINTS	PR00906	SecA protein signature	928	938	2.1E-58	IPR000185
PRINTS	PR00906	SecA protein signature	1171	1188	2.1E-58	IPR000185
PRINTS	PR00906	SecA protein signature	1134	1156	2.1E-58	IPR000185
PRINTS	PR00906	SecA protein signature	1208	1221	2.1E-58	IPR000185
PRINTS	PR00906	SecA protein signature	912	926	2.1E-58	IPR000185
PRINTS	PR00906	SecA protein signature	874	898	2.1E-58	IPR000185
Hamap	MF_01382	Protein translocase subunit SecA [secA].	813	1794	17.60754	IPR000185

Gene Ontology

Biological Process:

GO:0006605 (protein targeting) GO:0006886 (intracellular protein transport) GO:0017038 (protein import)

Molecular Function:

GO:0005515 (protein binding) GO:0005524 (ATP binding)

Cellular Component:

GO:0016020 (membrane)

KEGG Pathway

KO Term:

K03070 (preprotein translocase subunit SecA [EC:7.4.2.8])

Pathway:

ko02024 (Quorum sensing) map02024 (Quorum sensing) ko03060 (Protein export) map03060 (Protein export) ko03070 (Bacterial secretion system) map03070 (Bacterial secretion system)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G21650.3	Preprotein translocase SecA family protein. Encodes a component of the thylakoid-localized Sec system involved in the translocation of cytoplasmic proteins into plastid. Loss-of-function mutations result in arrest at the globular stage and embryo lethality.
RefSeq	NP_001185058.1	Preprotein translocase SecA family protein [Arabidopsis thaliana]
Swiss-Prot	D8WUA4	Protein translocase subunit SECA2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SECA2 PE=1 SV=1
TrEMBL	V4KTM1	Protein translocase subunit SecA OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10006535mg PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg10458, jg9019
Aizoaceae	Mesembryanthemum crystallinum	2	gene_1077, gene_13408
Amaranthaceae	Atriplex hortensis	2	Ah024121, Ah031607
Amaranthaceae	Beta vulgaris	2	BVRB_1g010050, BVRB_5g122730
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg2775, Sbi_jg28369, Sbi_jg31191, Sbi_jg58082 ... Sbi_jg58084
Amaranthaceae	Salicornia europaea	2	Seu_jg25704, Seu_jg7111
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00004576, GOSA_00020180
Amaranthaceae	Suaeda glauca	4	Sgl11665, Sgl17164, Sgl54639, Sgl59975
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000011856, gene:ENSEOMG00000013510 ... gene:ENSEOMG00000031530, gene:ENSEOMG00000034341, gene:ENSEOMG00000044225, gene:ENSEOMG00000046942
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.1AG0012840, CQ.Regalona.r1.1BG0013100 ... CQ.Regalona.r1.8AG0010550, CQ.Regalona.r1.8BG0011700
Anacardiaceae	Pistacia vera	2	pistato.v30007280, pistato.v30039110
Apiaceae	Apium graveolens	3	Ag11G03939, Ag6G02443, Ag9G02368
Arecaceae	Cocos nucifera	2	COCNU_01G000270, COCNU_15G003170
Arecaceae	Phoenix dactylifera	2	gene-LOC103701417, gene-LOC103720122
Asparagaceae	Asparagus officinalis	2	AsparagusV1_02.2259.V1.1, AsparagusV1_07.3638.V1.1
Asteraceae	Flaveria trinervia	2	Ftri10G32559, Ftri18G11286
Brassicaceae	Arabidopsis thaliana	2	AT1G21650.3, AT4G01800.2
Brassicaceae	Eutrema salsugineum	2	Thhalv10006535m.g.v1.0, Thhalv10028392m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp1g19170.v2.2, Sp6g01650.v2.2
Brassicaceae	Brassica nigra	2	BniB03g009290.2N, BniB08g040660.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq03G1867, Ceq06G0547
Casuarinaceae	Casuarina glauca	2	Cgl03G2007, Cgl06G0567
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno05g06910, gene.Cymno08g07140
Dunaliellaceae	Dunaliella salina	2	Dusal.0027s00037.v1.0, Dusal.0035s00032.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate01g16040, gene.Thate05g12950
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG04.547, evm.TU.LG06.839
Plantaginaceae	Plantago ovata	2	Pov_00016539, Pov_00021694
Plumbaginaceae	Limonium bicolor	2	Lb4G22942, Lb6G30841
Poaceae	Echinochloa crus-galli	5	AH02.1497, BH02.1573, BH04.644, CH02.1719, CH04.655
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_1AG0015110, gene-QOZ80_1BG0063980 ... gene-QOZ80_9AG0670100, gene-QOZ80_9BG0693570
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.3HG0259100.1, HORVU.MOREX.r3.4HG0347020.1
Poaceae	Lolium multiflorum	3	gene-QYE76_052738, gene-QYE76_059523, gene-QYE76_064524
Poaceae	Oryza coarctata	3	Oco01G009280, Oco02G009570, Oco22G003520
Poaceae	Oryza sativa	2	LOC_Os01g21820.1, LOC_Os11g08980.1
Poaceae	Paspalum vaginatum	2	gene-BS78_03G139800, gene-BS78_05G097000
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0103927, Pt_Chr0603665
Poaceae	Sporobolus alterniflorus	6	Chr02G022280, Chr05G013160, Chr05G013200, Chr05G013210 ... Chr16G010730, Chr17G009810
Poaceae	Thinopyrum elongatum	2	Tel3E01G338700, Tel4E01G158600
Poaceae	Triticum dicoccoides	4	gene_TRIDC3AG028190, gene_TRIDC3BG032070 ... gene_TRIDC4AG034290, gene_TRIDC4BG015530
Poaceae	Triticum aestivum	6	TraesCS3A02G198400.1, TraesCS3B02G222700.1 ... TraesCS3D02G196700.2, TraesCS4A02G216200.1, TraesCS4B02G100000.1, TraesCS4D02G096200.1
Poaceae	Zea mays	2	Zm00001eb090990_P001, Zm00001eb130760_P002
Poaceae	Zoysia japonica	2	nbis-gene-27238, nbis-gene-6517
Poaceae	Zoysia macrostachya	2	Zma_g10242, Zma_g18533
Portulacaceae	Portulaca oleracea	3	evm.TU.LG04.1549, evm.TU.LG10.1366, evm.TU.LG11.1721
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g13940, gene.Posoc05g18660
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_5_RagTag.729, evm.TU.Scaffold_7_RagTag.1138
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-10616, nbisL1-mrna-18708
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-103, nbisL1-mrna-5559
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-11369, nbisL1-mrna-13125
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000002l.412, evm.TU.utg000006l.609
Rhizophoraceae	Kandelia obovata	2	Maker00011737, Maker00013085
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-10163, nbisL1-mrna-8110
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-7364, nbisL1-mrna-9803
Salicaceae	Populus euphratica	2	populus_peu27429, populus_peu32459
Solanaceae	Lycium barbarum	2	gene-LOC132627149, gene-LOC132644885
Solanaceae	Solanum chilense	2	SOLCI001197400, SOLCI003112400
Solanaceae	Solanum pennellii	2	gene-LOC107002391, gene-LOC107004481
Tamaricaceae	Reaumuria soongarica	2	gene_17557, gene_866
Tamaricaceae	Tamarix chinensis	2	TC03G2545, TC07G1717
Zosteraceae	Zostera marina	4	Zosma03g36860.v3.1, Zosma03g36910.v3.1, Zosma06g28380.v3.1 ... Zosma07g00120.v3.1