halophFGD

Basic Information

Locus ID: Thhalv10006486m.g.v1.0

Species & Taxonomic ID: Eutrema salsugineum & 72664

Genome Assembly: GCF_000478725.1

Description: protein modification by small protein conjugation or removal

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
scaffold_19	1786432	1788125	+	Thhalv10006486m.g.v1.0

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.73	21,340.41 Da	40.39	82.66	-0.80

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Coils	Coil	Coil	22	42	-	-
Coils	Coil	Coil	151	178	-	-

Best hit

Source	Best Hit ID	Description
TAIR	AT3G58360.1	TRAF-like family protein.
RefSeq	XP_009138965.1	MATH domain and coiled-coil domain-containing protein At3g58360-like [Brassica rapa]
Swiss-Prot	Q9M2I0	MATH domain and coiled-coil domain-containing protein At3g58360 OS=Arabidopsis thaliana OX=3702 GN=At3g58360 PE=4 SV=1
TrEMBL	V4LP28	XH domain-containing protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10006486mg PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Chenopodium album	2	gene:ENSEOMG00000020776, gene:ENSEOMG00000042009
Anacardiaceae	Pistacia vera	2	pistato.v30053150, pistato.v30053760
Asparagaceae	Asparagus officinalis	3	AsparagusV1_04.1844.V1.1, AsparagusV1_05.3047.V1.1 ... AsparagusV1_09.696.V1.1
Brassicaceae	Arabidopsis thaliana	38	AT1G31370.1, AT1G31380.1, AT1G31390.1, AT1G31400.1 ... AT2G01790.1, AT2G05400.1, AT2G05410.1, AT2G05420.1, AT2G05430.1, AT2G42460.1, AT2G42470.1, AT2G42480.1, AT3G27040.1, AT3G29580.1, AT3G44790.1, AT3G44800.1, AT3G44805.1, AT3G58200.1, AT3G58210.1, AT3G58220.2, AT3G58230.1, AT3G58240.1, AT3G58250.1, AT3G58260.1, AT3G58270.1, AT3G58280.1, AT3G58290.1, AT3G58320.1, AT3G58330.1, AT3G58340.1, AT3G58350.1, AT3G58360.1, AT3G58370.1, AT3G58380.1, AT3G58400.1, AT3G58410.1, AT3G58430.1, AT3G58440.1
Brassicaceae	Eutrema salsugineum	38	Thhalv10005920m.g.v1.0, Thhalv10006412m.g.v1.0 ... Thhalv10006427m.g.v1.0, Thhalv10006437m.g.v1.0, Thhalv10006449m.g.v1.0, Thhalv10006467m.g.v1.0, Thhalv10006470m.g.v1.0, Thhalv10006486m.g.v1.0, Thhalv10008254m.g.v1.0, Thhalv10010958m.g.v1.0, Thhalv10011795m.g.v1.0, Thhalv10011971m.g.v1.0, Thhalv10011981m.g.v1.0, Thhalv10011998m.g.v1.0, Thhalv10012015m.g.v1.0, Thhalv10012031m.g.v1.0, Thhalv10012069m.g.v1.0, Thhalv10012071m.g.v1.0, Thhalv10012142m.g.v1.0, Thhalv10012179m.g.v1.0, Thhalv10016883m.g.v1.0, Thhalv10017071m.g.v1.0, Thhalv10017566m.g.v1.0, Thhalv10023572m.g.v1.0, Thhalv10023616m.g.v1.0, Thhalv10023897m.g.v1.0, Thhalv10023954m.g.v1.0, Thhalv10023996m.g.v1.0, Thhalv10024005m.g.v1.0, Thhalv10024153m.g.v1.0, Thhalv10026867m.g.v1.0, Thhalv10028053m.g.v1.0, Thhalv10028058m.g.v1.0, Thhalv10028109m.g.v1.0, Thhalv10028307m.g.v1.0, Thhalv10028318m.g.v1.0, Thhalv10029184m.g.v1.0, Thhalv10029219m.g.v1.0
Brassicaceae	Schrenkiella parvula	18	Sp1g34680.v2.2, Sp2g04170.v2.2, Sp2g04180.v2.2 ... Sp4g24600.v2.2, Sp4g24610.v2.2, Sp5g04440.v2.2, Sp5g04450.v2.2, Sp5g04453.v2.2, Sp5g04457.v2.2, Sp5g04460.v2.2, Sp5g04480.v2.2, Sp5g04500.v2.2, Sp5g04510.v2.2, Sp5g21580.v2.2, Sp6g09200.v2.2, Sp6g09210.v2.2, Sp7g05400.v2.2, SpUn0053_0040.v2.2
Brassicaceae	Brassica nigra	59	BniB01g003420.2N, BniB01g003430.2N, BniB01g003440.2N ... BniB01g003450.2N, BniB01g025850.2N, BniB02g000230.2N, BniB02g001350.2N, BniB02g040450.2N, BniB02g049390.2N, BniB02g051720.2N, BniB03g001240.2N, BniB03g010160.2N, BniB03g011950.2N, BniB03g051100.2N, BniB03g052390.2N, BniB03g055960.2N, BniB04g020230.2N, BniB04g020250.2N, BniB04g020290.2N, BniB04g020300.2N, BniB04g020330.2N, BniB06g001540.2N, BniB06g054900.2N, BniB06g054910.2N, BniB06g054920.2N, BniB06g054930.2N, BniB06g054940.2N, BniB06g054960.2N, BniB06g054970.2N, BniB06g054980.2N, BniB06g054990.2N, BniB06g055000.2N, BniB06g055010.2N, BniB06g055020.2N, BniB06g055030.2N, BniB06g055040.2N, BniB06g055050.2N, BniB06g055060.2N, BniB06g055080.2N, BniB06g055090.2N, BniB06g055100.2N, BniB06g055120.2N, BniB06g055130.2N, BniB06g055140.2N, BniB06g055150.2N, BniB06g063480.2N, BniB06g063490.2N, BniB06g063500.2N, BniB06g063510.2N, BniB06g063530.2N, BniB06g063540.2N, BniB07g008670.2N, BniB07g045970.2N, BniB07g046280.2N, BniB07g046490.2N, BniB08g027490.2N, BniB08g072890.2N, BniB08g072950.2N, BniB08g073000.2N
Casuarinaceae	Casuarina glauca	1	Cgl05G1118
Plantaginaceae	Plantago ovata	1	Pov_00021253
Poaceae	Zoysia japonica	1	nbis-gene-36802
Salicaceae	Populus euphratica	1	populus_peu12364
Solanaceae	Solanum pennellii	1	gene-LOC107019779
Zosteraceae	Zostera marina	6	Zosma01g13790.v3.1, Zosma02g07570.v3.1, Zosma03g09470.v3.1 ... Zosma03g10120.v3.1, Zosma05g15530.v3.1, Zosma05g17230.v3.1