Basic Information
Locus ID:
Thhalv10006421m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
MAP kinase kinase kinase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_19 | 2616259 | 2617134 | - | Thhalv10006421m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.78 | 32,161.89 Da | 46.09 | 90.72 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 18 | 263 | 7.3E-34 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 15 | 279 | 5.13E-51 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 15 | 275 | 2.2E-45 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 13 | 263 | 32.824108 | IPR000719 |
| ProSitePatterns | PS00109 | Tyrosine protein kinases specific active-site signature. | 135 | 147 | - | IPR008266 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 19 | 41 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40580.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_024012938.1 | mitogen-activated protein kinase kinase kinase 3 [Eutrema salsugineum] | 0 |
| Q8BTW9 | Serine/threonine-protein kinase PAK 4 OS=Mus musculus OX=10090 GN=Pak4 PE=1 SV=1 | 0 | |
| TrEMBL | V4L2D8 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10006421mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006421m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g06220.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g064480.2N |