Basic Information
Locus ID:
Thhalv10006395m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
kelch repeat-containing F-box family protein
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_19 | 1256402 | 1257649 | - | Thhalv10006395m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.43 | 46,208.76 Da | 62.11 | 68.82 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01344 | Kelch motif | 194 | 239 | 3.7E-11 | IPR006652 |
| Pfam | PF00646 | F-box domain | 15 | 58 | 4.3E-6 | IPR001810 |
| Pfam | PF01344 | Kelch motif | 141 | 191 | 8.7E-5 | IPR006652 |
| SUPERFAMILY | SSF117281 | Kelch motif | 113 | 397 | 3.01E-34 | IPR015915 |
| SUPERFAMILY | SSF81383 | F-box domain | 11 | 59 | 6.41E-10 | IPR036047 |
| Gene3D | G3DSA:2.120.10.80 | - | 86 | 360 | 7.2E-33 | IPR015915 |
| Gene3D | G3DSA:1.20.1280.50 | - | 13 | 66 | 8.8E-6 | - |
| SMART | SM00612 | kelc_smart | 206 | 262 | 9.4E-7 | IPR006652 |
| SMART | SM00612 | kelc_smart | 151 | 204 | 0.11 | IPR006652 |
| SMART | SM00256 | fbox_2 | 18 | 58 | 4.2E-6 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 78 | 108 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G59940.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_006402638.1 | F-box/kelch-repeat protein SKIP20 [Eutrema salsugineum] | 0 |
| Q9M1Y1 | F-box/kelch-repeat protein SKIP20 OS=Arabidopsis thaliana OX=3702 GN=SKIP20 PE=1 SV=1 | 0 | |
| TrEMBL | V4NDK7 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10006395mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology