Basic Information
Locus ID:
Thhalv10006383m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
F-box Kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_19 | 996990 | 998051 | - | Thhalv10006383m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.59 | 40,126.83 Da | 47.71 | 92.12 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 8 | 53 | 2.2E-7 | IPR001810 |
| SUPERFAMILY | SSF117281 | Kelch motif | 74 | 317 | 1.83E-24 | IPR015915 |
| SUPERFAMILY | SSF81383 | F-box domain | 6 | 91 | 5.76E-7 | IPR036047 |
| Gene3D | G3DSA:2.120.10.80 | - | 56 | 276 | 7.6E-17 | IPR015915 |
| SMART | SM00256 | fbox_2 | 12 | 52 | 5.9E-5 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G02310.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_006402565.2 | putative F-box/kelch-repeat protein At4g02310 [Eutrema salsugineum] | 0 |
| O81414 | Putative F-box/kelch-repeat protein At4g02310 OS=Arabidopsis thaliana OX=3702 GN=At4g02310 PE=4 SV=1 | 0 | |
| TrEMBL | V4LVX0 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10006383mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G02310.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10000440m.g.v1.0, Thhalv10000680m.g.v1.0 ... |