Basic Information
Locus ID:
Thhalv10006258m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Short Name:
BRH1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_19 | 732078 | 733088 | + | Thhalv10006258m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 22,036.07 Da | 61.65 | 81.14 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 94 | 137 | 2.22296E-14 | - |
| Pfam | PF13639 | Ring finger domain | 93 | 137 | 3.2E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 71 | 143 | 6.86E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 71 | 146 | 1.1E-18 | IPR013083 |
| SMART | SM00744 | ringv_2 | 93 | 137 | 0.008 | IPR011016 |
| SMART | SM00184 | ring_2 | 94 | 136 | 6.3E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 94 | 137 | 12.430266 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61460.1 | brassinosteroid-responsive RING-H2. Encodes a novel ring finger protein and forms an N-terminal hydrophobic domain and a C-terminal RING-H2 signature. Expression is down regulated by brassinolide. | 0 |
| RefSeq | XP_024012788.1 | E3 ubiquitin-protein ligase RHA1B [Eutrema salsugineum] | 0 |
| Q9XF92 | Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH1 PE=2 SV=1 | 0 | |
| TrEMBL | V4ND47 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10006258mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology