Basic Information
Locus ID:
Thhalv10006175m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_19 | 284869 | 286107 | + | Thhalv10006175m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.91 | 29,052.58 Da | 81.72 | 80.46 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 112 | 155 | 5.3E-15 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 104 | 165 | 9.28E-23 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 89 | 162 | 4.2E-23 | IPR013083 |
| SMART | SM00184 | ring_2 | 113 | 154 | 1.7E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 113 | 155 | 13.536741 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 187 | 213 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 184 | 215 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62690.1 | AtL5. Encodes a RING-H2 zinc finger protein related to ATL2. The ATL gene family is represented by fifteen sequences that contain, in addition to the RING, a transmembrane domain which is located in most of them towards the N-terminal end. | 0 |
| RefSeq | XP_006402353.1 | RING-H2 finger protein ATL5 [Eutrema salsugineum] | 0 |
| Q9LZJ6 | RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1 | 0 | |
| TrEMBL | V4NCT4 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10006175mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology