Basic Information
Locus ID:
Thhalv10006143m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_19 | 192901 | 195353 | - | Thhalv10006143m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.15 | 32,671.77 Da | 54.10 | 51.30 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05495 | CHY zinc finger | 33 | 113 | 4.3E-21 | IPR008913 |
| Pfam | PF14599 | Zinc-ribbon | 215 | 272 | 1.9E-25 | IPR039512 |
| Pfam | PF13639 | Ring finger domain | 166 | 210 | 4.9E-8 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 167 | 218 | 1.79E-11 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 104 | 161 | 1.31E-19 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 30 | 102 | 2.22E-18 | IPR037274 |
| Gene3D | G3DSA:2.20.28.10 | - | 239 | 279 | 1.4E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 161 | 212 | 8.2E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 168 | 210 | 1.7E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 168 | 210 | 11.781134 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 103 | 167 | 33.139317 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 26 | 101 | 25.355494 | IPR008913 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62970.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_006402321.1 | E3 ubiquitin-protein ligase MIEL1 [Eutrema salsugineum] | 0 |
| Q8VZK0 | E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1 | 0 | |
| TrEMBL | V4LJ64 | RING finger and CHY zinc finger domain-containing protein 1 OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10006143mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology