Basic Information
Locus ID:
Thhalv10006100m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_19 | 588965 | 591259 | + | Thhalv10006100m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.40 | 36,637.07 Da | 48.97 | 64.58 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16571 | RING-HC_SIAHs | 58 | 96 | 1.36576E-14 | - |
| CDD | cd03829 | Sina | 174 | 302 | 6.79946E-68 | - |
| Pfam | PF03145 | Seven in absentia protein family | 102 | 301 | 9.3E-80 | IPR018121 |
| SUPERFAMILY | SSF57850 | RING/U-box | 50 | 102 | 5.98E-6 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 113 | 305 | 7.19E-48 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 113 | 168 | 1.1E-16 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 9 | 112 | 7.1E-9 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 169 | 301 | 5.2E-38 | IPR008974 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 60 | 96 | 9.494419 | IPR001841 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 113 | 173 | 14.108719 | IPR013010 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 39 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 30 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61790.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_006402441.1 | E3 ubiquitin-protein ligase SINAT3 [Eutrema salsugineum] | 0 |
| Q84JL3 | E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana OX=3702 GN=SINAT3 PE=1 SV=1 | 0 | |
| TrEMBL | V4LJH0 | RING-type E3 ubiquitin transferase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10006100mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology