Basic Information
Locus ID:
Thhalv10006074m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
homocysteine S-methyltransferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_19 | 85598 | 87934 | + | Thhalv10006074m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.11 | 37,832.29 Da | 36.61 | 87.12 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02574 | Homocysteine S-methyltransferase | 27 | 335 | 2.6E-77 | IPR003726 |
| SUPERFAMILY | SSF82282 | Homocysteine S-methyltransferase | 22 | 338 | 8.11E-84 | IPR036589 |
| Gene3D | G3DSA:3.20.20.330 | - | 14 | 336 | 5.7E-104 | IPR036589 |
| PIRSF | PIRSF037505 | BHMT | 287 | 346 | 0.018 | IPR017226 |
| PIRSF | PIRSF037505 | BHMT | 15 | 209 | 1.6E-5 | IPR017226 |
| ProSiteProfiles | PS50970 | Homocysteine-binding domain profile. | 14 | 336 | 48.80397 | IPR003726 |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G63250.1 | homocysteine methyltransferase 2. Encodes a homocysteine methyltransferase (HMT). Among the three HMT coding genes in the genome, HMT2 is responsible for a significant proportion of HMT activity in the flower stalks and silique hulls. However, HMT2 does not significantly contribute to the total HMT activity in seeds. | 0 |
| RefSeq | XP_006402294.1 | homocysteine S-methyltransferase 2 [Eutrema salsugineum] | 0 |
| Q9M1W4 | Homocysteine S-methyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=HMT-2 PE=1 SV=1 | 0 | |
| TrEMBL | V4LMP5 | Hcy-binding domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10006074mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology