Basic Information
Locus ID:
Thhalv10006031m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Autophagy-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_19 | 2562050 | 2564974 | - | Thhalv10006031m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.46 | 43,288.48 Da | 45.52 | 81.81 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 32 | 276 | 1.03E-31 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 27 | 307 | 5.6E-18 | IPR015943 |
| SMART | SM00320 | WD40_4 | 108 | 143 | 390.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 190 | 230 | 0.17 | IPR001680 |
| SMART | SM00320 | WD40_4 | 13 | 56 | 170.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 233 | 274 | 0.3 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G56440.1 | homolog of yeast autophagy 18 (ATG18) D. | 0 |
| RefSeq | XP_006402985.1 | autophagy-related protein 18d [Eutrema salsugineum] | 0 |
| Q0WPK3 | Autophagy-related protein 18d OS=Arabidopsis thaliana OX=3702 GN=ATG18D PE=2 SV=1 | 0 | |
| TrEMBL | V4LX08 | Autophagy-related protein 18d-like OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10006031mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology